Welcome to findCPcli’s documentation!

• 1. Introduction
  • 1.1 Chokepoint reactions
  • 1.2. Dead-End Metabolites (DEM)
  • 1.3. Essential reactions
  • 1.4. Example
• 2. Installation
• 3. Pseudocode
• 4. Compute chokepoints
  • 4.1. Spreadsheet data
• 5. Compute growth dependent chokepoints
  • 5.1. Procedure pseudocode
• 6. Remove Dead-End Metabolites
• 7. Refine model with FVA
• 8. Tool parameters
• 9. Low Level API
• 10. License